Did It All Start with the Big Bang? And What Difference Does That Make for the Meaning and Purpose of Our Lives?

I have written about "The Big Bang Theory"--the popular television show that ran on CBS from 2007 to 2019.  Every episode began with a clever theme song that ended with the line: "It all started with the Big Bang."

Is that true?  The brief answer is: We don't know.  

We don't know because the earliest history of the universe is beyond what we can observe.  Whatever is beyond any possible observation cannot be known to exist or not to exist.  Asserting its existence is a matter of belief or faith, not a matter of scientific knowledge.  It's an assertion of religion (or revelation) not of science (or reason).  Here I agree with physicist Sabine Hossenfelder's insistence that scientific models of reality must always be tested against observational evidence because otherwise they are just speculative stories that are more like religion than science (Hossenfelder 2022).

What difference (if any) does this make for how we think about the purpose of our lives?  The brief answer is that we must choose between at least two alternatives.  We can believe in a divinely caused Big Bang that can support a moral cosmology that gives our lives a divinely appointed purpose that might include eternal life after death.  Or we can recognize a moral anthropology that gives our lives a human purpose in satisfying our natural desires--such as the desire to understand the universe, which can be expressed either as a desire for religious understanding through Revelation or a desire for intellectual understanding through Reason.

If human beings are to be free to pursue these alternative ways of life and to debate their relative merits, people must have the religious and intellectual liberty secured in a Lockean liberal open society that allows for freedom of thought and expression.  The kind of freedom that is manifest even in some popular culture such as the "Big Bang Theory" television show.

THE BIG BANG?

Human beings wonder about their origins.  They want to know where they came from.  They ask about not only their ancestral and social origins but even about the origin of everything.  That's why every human society has stories about how all things came to be as they are.  Commonly, they are religious stories about how divine beings brought the world into existence.  "In the beginning God created the heaven and the earth."  So declares the first verse of the King James Bible.

But what exactly does that mean?  And is it true?  Some theologians have said that God created everything ex nihilo (from nothing).  But others have said He created everything ex materia (from some preexisting material).  Some have said God created only one universe--the one that we live in.  But others have said that He might have created other universes, perhaps even an infinite number of them.

Some philosophers and scientists (like Aristotle) have said that there was no need for divine creators because the world was eternal as composed of eternal matter and thus had no beginning and no end.  But others (like Lucretius) have argued that the world has arisen spontaneously from the random motion of atoms without any need for divine intervention, and that atomic flux would eventually dissolve every world and create a new one.

Thomas Aquinas defended the orthodox Christian doctrine that God did indeed create everything from nothing.  But he admitted that this could not be scientifically demonstrated.  "It is by faith alone do we hold and not by any demonstration that can be proved, that the world did not always exist. . . that the world began to exist is an object of faith, but not of demonstration or science" (ST, I, q. 46, a. 2).

But then when Georges Lemaitre (a cosmologist who was also a Jesuit priest) first proposed a Big Bang theory of the universe, Pope Pius XIII pointed to this as a scientific demonstration of the divine creation of the universe from nothing.  Lemaitre himself, however, criticized the Pope for failing to see how this scientific theory had nothing to do with the Christian doctrine of creation, which could be believed by faith but not known by demonstration.

As I have indicated in my essays on the Big Bang, the scientific theory of the Big Bang has been invoked by some people (like William Lane Craig) to prove that God exists and by other people (like Stephen Hawking) to prove that God does not exist.  I have argued that both are mistaken.  

Craig states his argument as a syllogism:

 1. If the universe began to exist, then there is a transcendent cause which brought the universe into existence.

2. The universe began to exist.

3. Therefore, there is a transcendent cause which brought the universe into existence.

There are good reasons to doubt that those two premises are really scientific statements rather than affirmations of religious faith.

The first premise is not "obviously true," as Craig says, because while we all have experience of how natural causes work within the universe to bring things into existence, we do not have experience with how transcendent causes work outside the universe to bring the universe itself into existence. 

Consequently, while the "principle of sufficient reason"--that for everything there must be a causal explanation--might hold true for our ordinary experience of how things work within the universe, this principle does not necessarily apply to what things are like outside the universe, because none of us has ever stood "outside the universe" to see if the principle of sufficient reason holds true there.  Standing "outside the universe"--experiencing the transcendent or the supernatural--is a matter of religious imagination that is beyond our empirical experience of the world and thus beyond empirical science.

Therefore, the first premise of Craig's syllogism might be a statement of religious faith, but it is not a statement of scientific truth.

The same can be said about the second premise.  "The universe began to exist."  What exactly is being stated here?  There are two possibilities.  The universe began to exist out of nothing.  Or the universe began to exist out of something. 

Craig's argument requires that he equivocate between these two different statements.  The universe began to exist out of nothing is the Christian theological doctrine of creation ex nihilo.  But, then, this would deny Craig's claim that this premise is "religiously neutral."  In fact, that the universe began to exist out of nothing is not a scientific statement at all, because there is no human observational experience of absolute "nothing" that would make the study of "nothing" part of empirical science.  I even doubt that any of us really understands what we're saying when we talk about absolute "nothing," because it's beyond ordinary human experience.

And yet scientists like Stephen Hawking do speak about how the Big Bang could have come from "nothing" without any need for God.  His explanation is that "the laws of nature we call quantum mechanics" tell us "that not only could the universe have popped into existence without any assistance, like a proton, and have required nothing in terms of energy, but also that it is possible that nothing caused the Big Bang.  Nothing" (Hawking 2018, 34-35).  Far from the Big Bang proving God's existence, as Craig claimed, Hawking claimed to have shown that since nothing caused the Big Bang, God does not exist.

Hawking appeared five times on the "Big Bang Theory" show as the one scientist that Sheldon most admired.  He playfully mocked Sheldon, but he also recognized his brilliance.  Nothing was said about Hawking's atheism.

Notice that in his argument for atheism, Hawking had to assume at the origin of the universe the reality of the laws of quantum mechanics and of quantum vacuum states.  That's not nothing!  That's something!  Notice also that Hawking had no explanation for where those laws of physics came from.

Moreover, Hawking's model for the origin of the Big Bang is only one of many Big Bang models that scientists have proposed over the past 30 years.  By some counts, there are over two dozen such models (Afshordi and Halper 2025).  Some physicists say our universe is one of infinitely many universes, and each one is a bubble in a rapidly expanding quantum fuzz.  Others say the Big Bang started from the hot gas of tiny, vibrating strings.  Others say the Big Bang was a bounce of a collapsing universe into an expanding one.  Others say the universe is always in a state of eternal inflation.  In this video, Phil Harper gives the top ten answers to the question of what happened before the Big Bang:

Remarkably, in the end, it doesn't matter which model you choose because you end up with the same outcome--the universe that we live in today.  That it doesn't matter which story you believe points to a fundamental problem: there is no data to tell us which model is right.  The reason for that is that the fundamental constituents of nature are either too small, too far away, or too far in the past to be observed directly by us or indirectly through our instruments, and thus nature's secrets are buried so deep or so far away that we have no way to test our theoretical speculations about them.

Below is a sketch of the limits on the scale of human observational experience of nature.  At the small scale, microscopes have extended our experience beyond our visual reach, and the Large Hadron Collider (LHC) has extended our reach even deeper.  We have gone from scales of centimeters to millionths of a millionth of a millionth of a centimeter.  But we have reasons to believe that the fundamental constituents of nature that string theory attempts to describe lie at a distance scale 10 million billion times smaller than the resolving power of the LHC.  At the cosmic scale, telescopes have extended our experience of the astronomical universe; but no telescope will ever look beyond our universe's cosmic horizon and see the other universes assumed by the multiverse hypothesis.  The white area is the range of scales within human experience.  The grey area is outside that range.  You can click on the image to enlarge it.

Notice that the limit of the observable universe at the right end of this scale is the cosmic microwave background.

The oldest light we can see is the cosmic microwave background, emitted nearly four hundred thousand years after the hot Big Bang some 13.8 billion years ago.  It is almost perfectly uniform, with tiny variations in temperature at 1 part in 100,000, which are shown as red (hot) and blue (cold) spots.  This is the most important store of data for early-universe cosmology.  Multiple satellites with telescopes have studied these fluctuations.  Shown here is the most recent map produced by the European Space Agency's Planck satellite probe.

This illustrates how we can make and use technical instruments (such as telescopes) to extend the range of our observational experience of nature.  But it also illustrates the limits on how far that extension can go. 

When Aristotle explained his theological cosmology of a geocentric universe in De Caelo ("On the Heavens"), he admitted that it was hard to study the heavenly bodies--the stars, the sun, the planets, and the Moon--because "we have very little to go on, and we are placed at a great distance from the phenomena that we are trying to investigate," and "very few of their attributes are perceptible by sense experience" (286a7, 292a15-b25).  

So when Galileo defended his Copernican heliocentric system, he argued that Aristotle would have been persuaded by the evidence that Galileo had gathered from his telescope because Aristotle would have welcomed the use of the telescope to extend the range of human observational experience of distant planets and stars.

In the 400 years since Galileo, telescopes have become more powerful; and sending telescopes into space has expanded the depth of their observational power.  So that now we have stunning images of deep space from the James Webb Telescope and images of the cosmic microwave background that take us back over 13 billion years into the history of the universe.  But notice that the image of the cosmic microwave background is dated at four hundred thousand years after the Big Bang.  It's not clear that we will ever get any closer than that to the Big Bang, or to whatever there might have been before the Big Bang, which might forever be beyond our range of observational experience.  

Consequently, it will be impossible to test our models of the Big Bang against observational data, which will mean that our models will be little more than speculative origin myths that rest on belief or faith rather than scientific knowledge.

COSMIC PURPOSE?  HUMAN PURPOSE?

Asking about the origins of the Cosmos might seem like a very abstract kind of questioning that doesn't have much to do with ordinary human life.  But in fact it's one of the fundamental questions that we must ask as we try to make sense of our lives.

Must we believe that in the beginning God created the Universe and created man in His image if we want to give some cosmic meaning to our lives?  If this Divine Creator cares about us and for us, and if He endowed us with a knowledge of His moral law as an eternal standard of right and wrong to guide our moral life, and if He promises to help us live according to that moral law, or to save us from our sinful flaws, and then to reward those who love Him with eternal life, doesn't that give us a cosmic purpose to our lives?

But if we believe that in the beginning the universe arose through some impersonal process of natural evolution of matter and energy, and if eventually we somehow emerged as but blips of complexity in that uncaring universe, then how can we believe that our life has any meaning if there's no purpose to it?

Or should we see that even if there is no cosmic purposefulness in our lives grounded in the moral cosmology of a divinely created universe, there is a natural purposefulness in our lives grounded in the moral anthropology of our natural human desires?  Even if we live in an uncaring universe, we care for ourselves, and we strive to satisfy our natural desires.  Perhaps that is what makes our lives meaningful.

And so, for example, all human beings have some natural desire to understand the universe and their place in it.  This began when natural selection favored species that made correct predictions about their environment, and then organisms became increasingly better at understanding nature, until the evolution of the human cerebral cortex reached a point where human beings could understand their world by probing deeply into nature through intelligence, symbolism, and observation.

But then this natural human desire for understanding could be expressed either as a desire for religious understanding or a desire for intellectual understanding.  Human beings moved by the desire for religious understanding could imagine that they and their universe were created by a supernatural Mind analogous to the human mind.  Human beings moved by the desire for intellectual understanding could imagine that they and their universe were created by natural laws of evolution.  Some human beings can be theistic evolutionists who believe that God originally created the laws of nature and then allowed the universe to evolve naturally according to those laws, while occasionally intervening miraculously in that natural history to reveal Himself to human beings.

The tension between the natural desire for religious understanding and the natural desire for intellectual understanding is manifest in the Reason/Revelation Debate.

THE REASON/REVELATION DEBATE IN "THE YOUNG SHELDON"

Much of "The Big Bang Theory" revolves around Sheldon and his life story.  He grew up in East Texas in a Southern Baptist family that struggled to understand him because he was a child prodigy with an IQ of 187, who used his intelligence to make scientific arguments against religious belief.

From 2017 to 2024, CBS broadcasted a spin-off prequel--"Young Sheldon"--about Sheldon's childhood in the 1980s and 1990s.  The theme of scientific cosmology as supporting atheism against religious belief continued in this show.  

Pastor Jeff is the minister of the Southern Baptist church where the Cooper family goes every Sunday.  The young Sheldon is determined to show everyone that he can use science to refute Pastor Jeff's religious beliefs by arguing that the Bible's story of Creation is denied by the evidence for the natural evolution of the universe and human life.

One example of this conflict between science and religion is the third episode of the second season (airing on October 4, 2018) entitled "A Crisis of Faith and Octopus Aliens."  This episode begins with the Cooper family attending church on a Sunday.  Pastor Jeff is delivering his sermon, and suddenly Sheldon raises his hand to ask a question.  He challenges Pastor Jeff to tell him what God would look like in an alien planet inhabited by octopuses.  Would God look like an octopus?  Jeff struggles to answer.

Then, that Sunday afternoon, Sheldon's mother Mary receives a phone call and is told that the 17-year-old daughter of her friend Stephanie Hanson had died in an accident.  Mary and her husband George go to the funeral.  Throughout the week, Mary is troubled by the question of why an all-good God would torture a good Christian like Stephanie by killing her innocent child.  She talks with Pastor Jeff, but he cannot give her a satisfactory answer.

On Saturday night, Mary takes her mother to a bar named "Lucky's Place," where they drink and play billiards.  She tells her mother about her religious struggle and how this has depressed her mood.  She is drunk, and she is driven home by her mother.  Her husband George takes her to bed.

The next day, Sunday, she does not go to church, and she does not say a prayer at the family dinner.  Her husband and children are shocked to see these signs that she is doubting her faith in God.

Later, in the evening, Sheldon comes out to the front porch of their house to talk with her and attempt to comfort her.  Here's the scene:

Notice that even though Sheldon is an atheist, he makes a scientific argument for the existence of God based on the "fine-tuning" of the universe.  The strength of gravity must be mathematically precise--neither too strong nor too weak--to make it possible for the universe to exist as a place where human life can emerge.  Isn't it unlikely that that could be just an accident?  Doesn't this logically suggest the need for God to design the precise conditions that make the universe and life possible?  Sheldon indicates that he is still an atheist, but he does see this as a scientifically logical argument for religious belief.

Mary responds by saying that her problem with God is not a matter of logic in her head but what she feels in her heart.  Sheldon then makes another argument that might appeal to her heart.  In a world of over five billion people, how likely is it that I would have the one woman who is a perfect mom for me?  Mary is moved by this, and she thanks God for giving her Sheldon as her child.  In the voice-over, the adult Sheldon tells the viewers that he didn't tell his mom that he shouldn't have to share credit with God for making the argument that comforted her.

One of the YouTube clips of this scene has a comment from "B Sharp" about Sheldon's first argument:  "I love Young Sheldon, and this is a sweet moment.  However, Sheldon is using the fine-tuning apologetics argument, which is fallacious.  The universe wasn't created for humans.  Humans evolved to exist in this universe."

One could also respond in a similar way to Sheldon's second argument.  That a son loves his mother is not an unlikely event that requires some supernatural intervention, because parent-child bonding is an evolutionary adaptation of human nature.

But then what if evolved human nature includes a natural desire for religious understanding--for transcendence and transcendent meaning?  This emotional desire is not based on pure logic, and therefore it cannot be refuted by logical argument.  And, therefore, as Rebecca Goldstein has shown, the emotional longing for religious transcendence prevails over scientific reasoning, particularly when science faces fundamental mysteries in the universe that cannot ever be explained by reason alone; and thus Revelation cannot be refuted by Reason.  Perhaps this is what Mary Cooper meant when she pointed to what she felt in her heart.

Nevertheless, the fine-tuning argument is one of the best scientific arguments for God as the Intelligent Designer of the universe.  Christian astrophysicists like Owen Gingerich and Deborah Haarsma like to invoke this argument.  And yet, I have written some posts indicating the flaws in this line of reasoning.

It is not really clear, for example, that scientific cosmology shows that the universe is precisely fine-tuned for life, and particularly human life.  Most cosmologists agree that the universe will come to an end, and that all life will be extinguished.  Consider one line in the theme song for "The Big Bang Theory":

"It's expanding ever outward, but one day it will pause and start to go the other way, collapsing ever inward, we won't be here, it won't be heard.  Our best and brightest future that it'll make an even bigger bang!"

Does the end of the universe in a Big Collapse mean that far from being fine-tuned for life, the universe has been fine-tuned for death?  Or should we have faith in those eschatological religions that promise us eternal life after death?

In a liberal open society, we are free to openly debate such questions--even in popular television shows--without fear of persecution.

And in that debate, one of the big questions for us will be:  Did it all start with a Big Bang?

REFERENCES

Afshordi, Niayesh, and Phil Halper. 2025. Battle of the Big Bang: The New Tales of Our Cosmic Origins. Chicago: University of Chicago Press.

Hossenfelder, Sabine. 2022. Existential Physics: A Scientist's Guide to Life's Biggest Questions. New York: Viking.

The Darwinian Lockean Liberalism of Natural Religion

In this season of the year, our greetings of "Merry Christmas" and "Happy Holidays" acknowledge our natural human propensity to religious beliefs and rituals, while also acknowledging that in the modern liberal social orders in which many of us live today, we respect religious liberty and toleration.  "Merry Christmas" doesn't favor any one Christian tradition over any other.  And "Happy Holy Days" recognizes that there are some non-Christian religious observances during this season--particularly, the Jewish festival of Hanukkah.

The Darwinian Lockean Liberalism that I have defended explains the naturalness of religion as rooted in our evolved human nature.  It also explains why we need religious liberty and toleration so that all individuals have the equal liberty to pursue their natural desire for religious experience in their own way.

My position has provoked lots of criticisms, of which two are most prominent.  The first is that Darwinian Lockean Liberalism is incoherent insofar as Darwinian atheism denies the Christian foundations of Lockean Liberalism.  The second is that Lockean religious liberty and toleration denies the truth of Christian Integralism (Catholic or Protestant) that there is one true church--the true Christian Church established by Jesus Christ--and that this Christian Church can rightly use the secular authority of government to enforce the Orthodoxy of that Church.

I have previously responded to these two criticisms (here and here).  But after thinking more about these issues, I have decided to lay out a slightly revised version of my previous responses.

Various authors have countered my position with a syllogistic rebuttal (Dilley, 2013; Holloway, 2006; West, 2006).  I will call this “Dilley’s Syllogism” because Stephen Dilley formulated it in his Introduction to his edited book Darwinian Evolution and Classical Liberalism:

Classical (Lockean) liberalism is founded on Christianity.

Darwinism denies Christianity.

Therefore, Darwinism denies classical (Lockean) liberalism.

The conclusion of this syllogism is false, because the major premise is only partly true, and the minor premise is totally false.

The major premise has been asserted by those of my critics who are proponents of what they call “Christian classical liberalism” or “theistic classical liberalism” (Dilley, 2013, pp. 19, 23, 158-59).  I have inserted “Lockean” into the syllogism because these critics generally appeal to Locke as “the quintessential classical liberal” (Dilley, 2013, p. 198).  The only doctrinal teaching of Christianity that they mention as supporting Lockean classical liberalism is the idea of imago Dei: that all human beings have been created in the image of God (as declared in Genesis 1:26-27) seems to endow them with the equal moral dignity that supports the classical liberal teaching that all human beings are created equal in their moral dignity as equally endowed by God with natural rights (Dilley, 2013, p. 11). 

Locke seemed to adopt this idea in speaking about the law of nature as grounded in the nature of human beings as God’s “workmanship”:

Reason, which is that Law, teaches all Mankind, who will but consult it, that being all equal and independent, no one ought to harm another in his Life, Health, Liberty, or Possessions.  For Men being all the Workmanship of one Omnipotent, and infinitely wise Maker; All the Servants of one Sovereign Master, sent into the World by his order and about his business, they are his Property, whose Workmanship they are, made to last during his, not one another’s Pleasure (ST, 6).

Locke identified this idea of men being God’s property because they are his workmanship with man being created in God’s image, in the sense that all members of the human species were created as “intellectual creatures,” which gave them dominion over the “inferior creatures,” but without giving any human being dominion over any other human being, because all men were equal in having a human mind that was a likeness to the Mind of God (FT, 30, 39, 52-54, 85-86; ST, 56).

But Locke also claimed that natural rights were rooted in every man’s self-ownership (ST, 27).  Now, as Peter Laslett (1970, p. 100) observed, this principle of human self-ownership “almost contradicts his principle that men belong to God, not themselves.”  “Almost”?  Can men both belong to themselves and belong to God?  I have argued that evolutionary neuroscience can explain the human experience of self-ownership as rooted in the interoceptive capacity of the embodied brain.  But the human experience of being owned by God might be harder to explain scientifically.

The apparent contradiction between Locke’s principle of self-ownership and his principle of divine ownership can be resolved by seeing that Locke made what Michael Zuckert has called a “two-track argument,” in which “one track is theistic, the workmanship argument, an argument of natural theology; the other track is the appeal to self-ownership” (Zuckert, 2002, pp. 4-5; 2005, p. 431).  Locke believed that the workmanship argument would require a rational theology that could prove the existence of God.  From “the idea of ourselves as understanding, rational creatures,” we would have to infer “the idea of a supreme Being, infinite in power, goodness, and wisdom, whose workmanship we are” (ECHU, IV.3.18).  Through an anthropomorphic analogy, we could project from the idea of our own minds and other human minds the idea of a Divine Mind.  Thus, man would create God in man’s image (ECHU, IV.3.27; IV.10.1).  But then Locke admitted that having the idea of God in one’s mind does not prove God’s real existence (ECHU, IV.10.7; IV.10.19; IV.11.1).

Since he doubted that reason could prove God’s existence in support of the workmanship argument, Locke developed the self-ownership argument that would provide a purely natural ground for his law of nature.  He wanted to appeal to a rational theology of divine workmanship, but if that failed, he could fall back onto his natural self-ownership argument.  These two tracks—God and nature--are suggested by Locke’s repeated appeals to “the Laws of God and Nature” (FT, 56, 124; ST, 60, 66, 90, 93, 142, 195).  The “fixed and permanent rule of morals” could be “firmly rooted in the soil of human nature,” and human nature could be understood as created by “nature or God” (1997, p. 125).  Notice that the creative source of human nature is nature or God.

Consequently, the major premise of Dilley’s Syllogism is only partly true.  Yes, Locke’s classical liberalism can be grounded in the Christian doctrine of creation in the image of God as supporting the workmanship argument.  But Locke suggested that reason can neither prove nor disprove creationist theology.  And that led him to appeal to the self-ownership principle as a purely naturalistic argument that did not require any theological assumptions.  Another way of saying this is that Locke left the Reason/Revelation debate open, believing that neither side can refute the other.  And so, he often invited his readers to consider both what “Reason” taught them by their natural experience and what “Revelation” taught them through their reading of the Bible (ST, 25).

The minor premise of Dilley’s Syllogism—Darwinism denies Christianity—assumes that the Darwinian scientist believes that scientific reason can refute Christian revelation and thus supports atheism.  But even if this is true for some Darwinian scientists, it is not true for all--not even for Darwin himself.  Moreover, Darwinian evolutionary science recognizes that there is a natural desire for religious understanding, and so atheism is contrary to our evolved human nature.  But even though religious belief is natural for most human beings, what they believe about the supernatural will be determined by faith rather than reason.  And since religious believers can never reach agreement about the content of their faith, they must accept the fact of religious pluralism and recognize how that religious pluralism dictates the religious toleration that secures religious liberty.

Of course, there are Darwinian atheists.  Richard Dawkins, for example, has said that “I could not imagine being an atheist at any time before 1859, when Darwin’s Origin of Species was published.”  He thinks the Argument from Design has always been the best of the arguments for the existence of God, because the complexity of the living world appears to be the work of an intelligent designer—just as William Paley’s watch implied the existence of a watchmaker—and so we might infer that God is the Intelligent Designer of the living world.  David Hume rightly criticized this reasoning as illogical because it rests on a false analogy between human intelligent design and divine intelligent design.  We have all seen human intelligent designers at work as part of our ordinary human experience.  But we have never seen a Divine Intelligent Designer creating everything out of nothing.  This is not part of our ordinary human experience.  It is fallacious, therefore, to use apparent design in nature as evidence for the existence of God.  But even if Hume was right about this, Dawkins has observed, Hume did not offer any alternative explanation for apparent design in nature.  It was only in 1859, when Darwin showed how evolution by natural selection could explain complex biological design, that “Darwin made it possible to be an intellectually fulfilled atheist” (Dawkins, 1986, pp. 5-6).

And yet Darwin himself denied that his theory of evolution promoted atheism.  Consider what he said about “the Creator” in the last two paragraphs of The Origin of Species.  He rejected the common “view that each species has been independently created,” and he proposed instead that “it accords better with what we know of the laws impressed on matter by the Creator, that the production and extinction of the past and present inhabitants of the world should have been due to secondary causes, like those determining the birth and death of the individual.”  Then, in his famous last sentence, he spoke of the “grandeur in this view of life, with its several powers, having been originally breathed by the Creator into a few forms or into one,” and that “from so simple a beginning endless forms most beautiful and most wonderful have been, and are being evolved” (1936, pp. 373-74).

Here we see that Darwin adopted the medieval Scholastic metaphysics of “dual causality” in distinguishing supernatural primary causes and natural secondary causes (Maurer, 2004).  The Creator did not miraculously create each species of life separately.  But He did originally exercise primary causality in impressing the laws of nature on matter and breathing life into a few forms or into one.  Then, from that simple beginning, the Creator allowed all the forms of life to emerge through the secondary causes of the natural evolutionary process.

At this point in his life, Darwin was what today we would call a “theistic evolutionist” or “evolutionary creationist”—someone who believes that the existence of God as the Creator is compatible with evolutionary science.  Indeed, Darwin said that it was “absurd to doubt that a man may be an ardent Theist and an evolutionist.”  And even when, towards the end of his life, he became an agnostic, he insisted: “In my most extreme fluctuations, I have never been an atheist in the sense of denying the existence of God” (1879; 1969, pp. 92-96). 

In the creation/evolution debate among Christians today, many Christian thinkers—such as Francis Collins, Deborah Haarsma, Darrel Falk, Alvin Plantinga, and Justin Barrett—have defended evolutionary creationism in arguing that, just as Darwin said, one can be both a theist and an evolutionist (Collins, 2006; Stump, 2007).  Remarkably, even the “young-Earth creationists,” who believe in the literal six-days-creation story in Genesis and a 6,000-year-old Earth, concede that Darwin’s Origin of Species refuted the traditional belief that God specially created all species of life, because they agree that all species emerged through evolution by natural selection.  But they also insist that God had to specially create all the “kinds” of animals and plants, so that the evolution of species could unfold within the limits of those “kinds” (with “kinds” corresponding to the taxonomic level of “families”) (Wood, 2008, 2011; Wood and Murray, 2003; Ham, 2017, pp. 14-26).   This resembles what Darwin said about the Creator breathing life into “a few forms or into one,” from which all species could then evolve by natural selection.

Darwin and the evolutionary creationists agree with Locke that religious belief is natural for human beings because they are naturally inclined to infer from their knowledge of their own minds and the minds of others that there must be a divine mind that exercises a supernatural intelligent agency analogous to the natural intelligent agency of human minds.  Darwin observed that when “conceiving this immense and wonderful universe, including man with his capacity of looking far backwards and far into futurity,” he “felt compelled to look to a First Cause having an intelligent mind in some degree analogous to that of man,” which made him a theist (1969, pp. 92-93).  

Similarly, some evolutionary psychologists—such as Justin Barrett and Jesse Bering--have argued that the natural evolution of religious belief is rooted in the propensity of the human mind to detect rational agency in humans and other animals and then to infer a supernatural intelligent agency analogous to that of human minds (Barret, 2004; Bering, 2011).  But as we have seen, this anthropomorphic analogy between human and divine minds is dubious, and even if this explained the natural evolution of the idea of God in the human mind, that would not prove the existence of God.

This led Locke to conclude that believing in the existence of God is ultimately not a matter of reason but of faith.  And since “faith is not knowledge,” we cannot know what the true religion is (Locke, 1870, pp. 94-96; 1997, pp. 248-50; ECHU, IV.17-18).  Consequently, political rulers cannot coercively enforce belief in the religious orthodoxy of the true church, because religious believers cannot agree on what that orthodoxy is.  “Every man is orthodox to himself,” Locke observed in the Letter Concerning Toleration.  And “every church is orthodox to itself” (2010, pp. 7, 21, 38).  The simple fact of religious pluralism—that religious believers cannot agree on religious orthodoxy—supports Locke’s liberal argument for religious liberty and toleration of all religious sects that inflict no injury on others.  Religious liberty and religious pluralism create a free marketplace of religion in which religious movements must compete for adherents.  Those religious groups that succeed in satisfying the natural desire for religious understanding gain a larger share of the religious market (Seabright, 2024).

The mistake of the Christian Integralists (both Catholic and Protestant) in rejecting Lockean religious liberty and toleration and affirming Christian Theocracy (or Christian Nationalism) is their failure to see how any theocratic attempt to suppress religious pluralism must be oppressively unjust and also contrary to the religious voluntarism practiced by the early Christian Churches.

We can see then how a Darwinian Lockean Liberalism can explain natural religion and can secure the religious liberty and toleration that respect religious pluralism and allow every individual to satisfy his natural desire for religious understanding in his own way, while allowing all others the same religious liberty.

Merry Christmas and Happy Holidays!

REFERENCES

Barrett, J. 2004. Why Would Anyone Believe in God? Lanham, MD: Rowman and Littlefield.

Bering, J. 2011. The Belief Instinct: The Psychology of Souls, Destiny, and the Meaning of Life. New York: W. W. Norton.

Collins, F. S. 2006. The Language of God. New York: Free Press.

Darwin, C. 1879. Letter to John Fordyce, May 7. Cambridge, UK: Darwin Correspondence Project, Letter No.: DCP-LETT-12041.

Darwin, C. 1936. The Origin of Species & The Descent of Man. New York: Random House, The Modern Library.

Darwin, C. 1969. The Autobiography of Charles Darwin. Ed. N. Barlow. New York: W. W. Norton.

Dilley, S., ed. 2013. Darwinian Evolution and Classical Liberalism: Theories in Tension. Lanham, MD: Lexington Books.

Ham, K. 2017. "Young-Earth Creationism." In J. B. Stump, ed., Four Views on Creation, Evolution, and Intelligent Design. Grand Rapids, MI: Zondervan.

Holloway, C. 2006. The Right Darwin? Evolution, Religion, and the Future of Democracy. Dallas: Spence Publishing.

Laslett, P. 1970. Introduction. In: John Locke, Two Treatises of Government: A Critical Edition with an Introduction and Apparatus Criticus, by Peter Laslett. Second edition. Cambridge: Cambridge University Press, pp. 3-152.

Locke, J. 1870. Four Letters on Toleration. London: Ward, Lock, and Tyler.

Locke, J. 2010. A Letter Concerning Toleration and Other Writings, M. Goldie, ed. Indianapolis: Liberty Fund.

Maurer, A. 2004. "Darwin, Thomists, and Secondary Causality." The Review of Metaphysics 57: 491-514.

Seabright, P. 2024. The Divine Economy: How Religions Compete for Wealth, Power, and People. Princeton: Princeton University Press.

Stump, J. B., ed. 2017. Four Views on Creation, Evolution, and Intelligent Design. Grand Rapids, MI: Zondervan.

West, J. G. 2006. Darwin's Conservatives: The Misguided Quest. Seattle, WA: Discovery Institute Press.

Wood, T. C. 2008. "Species Variability and Creationism." Origins Number 62: 6-24.

Wood, T. C., and M. J. Murray. 2003. Understanding the Pattern of Life: Origins and the Organization of the Species. Nashville, TN: Broadman & Holman.

Zuckert, M. 2002. Launching Liberalism: On Lockean Political Philosophy. Lawrence: University Press of Kansas.

Zuckert, M. 2005. "Locke-Religion-Equality." The Review of Politics 67: 419-431.

If Humans and Chimps Are 15 Percent Genetically Different, What Difference Does That Make?

Think about how often you've heard it said that the genetic difference between human beings and chimpanzees is only slightly more than 1 percent, and therefore humans are 99 percent similar to chimps.  It is also said that this proves that chimps--and also bonobos--are our closest living evolutionary relatives.  This seems to be confirmed by the fact that chimpanzees and bonobos are more genetically similar to humans than to gorillas.  This 1 percent difference between humans and chimps fits the evolutionary timeline of five to eight million years since humans and chimps diverged from their last common ancestor.

But now an article published last May in Nature (Yoo et al., 2025) reports that a complete sequencing of ape genomes shows that the genetic difference between humans and chimps is a lot greater than 1 percent--more like 15 percent!  And yet perhaps I shouldn't say this article "reports" this because if you read the main article, you won't see this claim of a 15 percent difference.  You have to go to the Nature website and print out the "Supplementary Data" for the article, and even then, you have to work through the technical jargon to find the 15 percent difference.  Casey Luskin has posted a helpful article at the Discovery Institute website that digs deep into the "Supplementary Data" to uncover this remarkable finding.  You would think that such a surprising discovery would be prominently announced in Nature and in press releases: "The Chimp-Human Genetic Difference Is Not 1% But 15%!"  I think Luskin is right to suggest that the editors at Nature must have worked hard to hide this finding because it refutes the popular claim about "only a 1% difference" separating humans and chimps.  

Luskin says this refutes one of the "icons of evolution," as Jonathan Wells called them--that is, widely believed assertions about evolution that the proponents of "intelligent design theory" and "young-Earth creationism" deny.  It's not surprising, therefore, that creationists like Ken Ham have cited Luskin's article as proving that the creationists are right to deny that there is any common evolutionary ancestry linking humans and apes.  Ham explains that Bible teaches us that God created the "ape kind" and the "humankind" separately and created humans as a unique kind made in the image of God.

And yet I don't see that this newly discovered "15% difference" provides any support for the intelligent design theorists or the creationists in their denial of evolutionary science.

But first we need to understand how this new research allows us to calculate genetic difference and similarity.  The title of the article in Nature is "Complete Sequency of Ape Genomes."  The emphasis is on "complete," because the first human and ape genome sequences were incomplete.  They excluded extremely repetitive sequences and large-scale structural differences such as inversions and duplications of genomic sequences.  So the first reports of only 1% differences between human and chimp genomes were based on incomplete drafts of the genomes.  But now the complete sequency in this article allows for a fuller comparison of similarities and differences in the sequences.

The authors found two kinds of differences--"gap divergence" and "single nucleotide variation" (SNV).

Luskin prepared this figure to illustrate the difference between "SNVs" and "Gaps" between two genomes.  Gaps represent nucleotides or segments of nucleotides that don't exist in one of the genomes.  SNVs represent places where the nucleotides are different for the two genomes.  In this illustration, we have 30 nucleotides of the target genome with 3 SNVs and 9 gaps relative to the query genome.  So SNV divergence is 10%, and gap divergence is 30%, which means a total divergence of 40%.

If you go to the Supplemental Data for the Yoo et al. article, you will see that Figure III.12 shows the SNVs in comparing the genomes for humans, chimpanzees, bonobos, and orangutans--the four "great ape" species who belong to the Hominidae family.  When the human genome is the "target" genome, the "gap divergence" for the gorilla genome is 27.3 percent, for the Sumatran orangutan it's 16.5 percent, for the bonobo it's 14.4 percent, and for the chimpanzee it's 13.3 percent. 

Figure III.11 shows the SNV divergences, which are 2 percent for the gorilla, 3.6 percent for the Sumatran orangutan, 1.6 percent for the bonobo, and 1.6 percent for the chimpanzee.

If we add the gap divergences to the SNV differences, we get these total degrees of difference between human and ape genomes: 29.3 percent for the gorilla, 20.1 percent for the Sumatran orangutan, 16 percent for the bonobo, and 14.9 percent for the chimpanzee.  That's how we get the estimate of almost 15 percent difference between the chimp and human genomes, which is a lot higher than the purported 1 percent difference.  

It should be noted that these comparisons are for the 44 non-sex chromosomes in the human genome--that is, excluding the X and Y chromosomes.  As compared with chimps, the human X chromosome has a 4.4 percent gap divergence and 1.1 percent SNV divergence, while the human Y chromosome has an amazing 56.6 percent gap divergence and 3.9 percent SNV divergence.

Although this new research shows that the genetic differences between humans and apes are greater than had been previously reported, this does not deny the evolutionary story of the common evolutionary ancestry of humans and apes.  The genetic similarity between humans and apes is still very great--85 percent!  And humans are more genetically similar to chimps and bonobos than they are to orangutans and gorillas, which supports the claim that chimps and bonobos really are our closest living evolutionary relatives.

ALL IN THE GENES?  OR FOUR DIMENSIONS OF EVOLUTION?

There is an obvious problem here, however.  All of us have seen chimpanzees in zoos.  And many of us have seen bonobos if we have gone to zoos in San Diego, Milwaukee, or Cincinnati that have bonobos.  Those zoos often have displays that say something about the 1 percent difference between humans and chimpanzees.  Now those displays might have to be changed to read 15 percent.  But even so, when we look at those apes and compare them with humans, it's very hard to believe that the difference is only 1 to 15 percent.  It's simply not true that humans and apes are 85 percent the same.  The gap between the mental achievements of human beings and those of the apes is staggering.

Most human beings don't believe that evolutionary genetics can fully explain that gap, and that's why so many people reject the science of evolution, and why so many believe that the superiority of the human mind over the ape mind can only be explained by the supernatural work of an Intelligent Designer or Divine Creator.

They are right to believe that evolutionary genetics cannot fully explain the achievements of the human mind.  But that's because genetics is only a small part of evolutionary science.  As I have indicated in some previous posts, there are four levels of evolutionary inheritance--genetics, epigenetics, culture, and symbolism (Jablonka and Lamb, 2005).

The genetic inheritance system is the foundation for the Neo-Darwinian theory of evolution. But genetic reductionism and determinism fail to see how gene action depends on the complexity of interacting causes within the genome, within cells, within organisms, within groups of organisms, and within ecological circumstances. Except for a few single-gene genetic disorders, "genetic astrology"--the idea that genes directly control specific traits--must be dismissed as foolish.

The epigenetic inheritance system is evident in the differences between specialized cells. Brain cells, liver cells, and skin cells are very different, although the nucleus of each cell has the same genome. Their differences are epigenetic, rather than genetic, because they have arisen through their developmental history in which there were different patterns of gene activation and interaction within the cell. This developmental information is passed on as these cells divide to produce more cells of the same kind. It is possible for evolution to occur through heritable epigenetic variation even without genetic variation. Just as a musical recording transmits interpretations in musical performances of a musical score, so does an epigenetic inheritance system transmit interpretations of the information in DNA, so that there is a Lamarkian inheritance of phenotypes instead of genotypes. One version of such inheritance that is now under active study is DNA methylation: strands of DNA are chemically modified during development, and these modifications can be transmitted through reproduction.  The chemical modification in epimutation is not in the DNA itself but in the chromatin marking. Methylated DNA has a small methyl group attached to some of its bases. The pattern of methylation influences which regions of DNA are expressed. The different kinds of cells in the human body have the same DNA, but the different patterns of methylation regulate the expression of DNA.

The behavioral inheritance system is the transmission of information among animals through social learning. For example, among some animals (including human beings) mothers transmit food preferences to their offspring, because information about what mother is eating is transmitted either in the womb or through suckling, so that the offspring inherits a preference for that food. More complex forms of social learning come through animal culture. For example, some chimpanzees can discover how to open nuts with a stone and then pass on this practice within their group so that it becomes a social tradition. Different communities of chimps in Africa have different cultures based on distinctive profiles of traditional practices transmitted by social learning. As opposed to genetic evolution, cultural evolution is not blind but targeted to functional change.

The symbolic inheritance system is uniquely human because it shows the qualitative leap that defines our humanity as based on our capacity for symbolic thought and communication. Other animals can communicate through signs. But only human beings can communicate through symbols. The evolution of human language was probably crucial for the evolution of symbolism. Symbolic systems allow us to think about abstractions that have little to do with concrete, immediate experiences. Symbolic systems allow human beings to construct a shared imagined reality. These symbolic constructions are often fictional and future-oriented. Art, religion, science, and philosophy are all manifestations of human symbolic evolution. 

To explain why humans are somewhat similar to the great apes and yet radically different from them, we have understand how all four levels of human evolution have shaped human beings to be the unique animals that they are.

COMMON DESCENT OR INTELLIGENT DESIGN?  OR BOTH?

Although Casey Luskin is an advocate of intelligent design theory as the best alternative to evolutionary science, he stresses that he is not pointing to the new estimate of 15 percent difference between humans and chimps as evidence that refutes evolution.  As long as the five to eight million years since humans and chimps diverged from their last common ancestor is enough time for this 15 percent difference to evolve, then the evolutionary story of common ancestry is still defensible.  

But still, Luskin suggests, intelligent design theory has a better explanation for this genetic similarity--85 percent--between chimps and humans:  "Functional genetic similarities between humans and chimps could be explained by common ancestry or by common design.  Common ancestry is not the only way to explain genetic similarities.  Intelligent agents can re-use functional code in different designs.  Common design can explain shared functional genetic similarities just as well as common descent can."

There are two mistakes in Luskin's reasoning, however.  First, he mistakenly assumes a dichotomy between common descent and common design, as if they were mutually exclusive.  As I have noted previously, one of the leading advocates of intelligent design theory--Michael Behe--argues (in The Edge of Evolution) that the genetic similarity between humans and chimps is evidence that human beings evolved from primate ancestors shared with chimpanzees.  He explains that intelligent design is required to explain the emergence of the higher taxonomic levels of life (kingdoms, phyla, classes) but not the lower levels (orders, families, genera, species).  This means that the evolution of species could be fully Darwinian.

Behe is an intelligent-design evolutionist, because he insists: "The possibility of intelligent design is quite compatible with common descent, which some religious people disdain.  What's more, although some religious thinkers envision active, continuing intervention in nature, intelligent design is quite compatible with the view that the universe operates by unbroken natural law, with the design of life perhaps packed into its initial set-up" (166).  Luskin refuses to recognize Behe's position.

Luskin is also mistaken, however, in assuming the plausibility of the arguments for intelligent design.  He thus ignores my objection that the arguments for intelligent design are fallacious in two respects.  First, intelligent design reasoning depends completely on the fallacy of negative argumentation from ignorance, in which intelligent design proponents argue that if evolutionary scientists cannot fully explain the step-by-step evolutionary process by which complex living forms arise, then this proves that these complex forms of life must be caused by the intelligent designer.  This is purely negative reasoning because the proponents of intelligent design can offer no positive explanation of their own as to exactly when, where, and how the intelligent designer caused these forms of life.  

The second fallacy is the subtle use of the fallacy of equivocation--in the equivocation between human intelligent design and supernatural intelligent design.  We have all had the experience of seeing how human intelligent agents create artificial products by intelligent design.  But it does not follow logically from this that we have all had the experience of seeing how supernatural intelligent agents create artificial products by intelligent design.

CREATED BY GOD IN HIS IMAGE?  OR EVOLVED IN THE IMAGE OF PRIMATES?  OR BOTH?

Ken Ham (2025) argues, on the contrary, that even if we have not seen with our own eyes God creating everything out of nothing, this has been revealed to us through the Bible; and part of that revelation is that God created all the "kinds" of plants and animals separately, and He created the "chimp kind" to be utterly different from the "humankind," which was created in His image.

But as I have said in my previous posts on Ham and his two museums in Kentucky--the Creation Museum and the Ark Encounter--he mistakenly assumes that he is conveying the clear meaning of the Bible and that the Bible's clear teaching is incompatible with Darwinian evolution.

The Bible says nothing about God creating apes and humans as separate "kinds."  The Book of Genesis never mentions apes.  Actually, in the whole Bible, the Hebrew word for "ape" appears only twice (I Kings 10:22, 2 Chronicles 9:21), and never in the context of creation.  And while Genesis speaks of God creating plants and animals "after their kind," it never identifies human beings as a "kind."  Consider Genesis 1:26--"And God said, Let us make man in our image, after our likeness."  The phrase "after our likeness" takes the place of "after their kind," suggesting that in being created in the likeness of God, man is not bound by a "kind."  So there is no Biblical basis for Ham to speak of "humankind."

Moreover, the Hebrew word min that is translated as kind in the King James Bible is ambiguous.  In the Latin translation of the Bible, min is translated as the Latin word species.  Consequently, for almost two thousand years, Biblical believers assumed that God's creating "kinds" meant that God created each "species" separately, and that each species was eternally fixed.  But then after Darwin published his Origin of Species in 1859, in which he argued against the "theory of special creation" that God had created each species separating, some Christians began to believe that the created "kinds" in the Bible referred not to "species" but to some higher level of taxonomy.  Then, in 1941, the Christian biologist Frank Marsh coined the word baramin (combining the Hebrew words for "created" and "kind") as the best term for "created kind."  He argued that a "created kind" was not at the taxonomic level of "species" but at or near the level of "family."  This allowed Biblical believers to accept Darwin's theory of the origin of "species" by natural selection while also believing that God had created the "families" of plants and animals to be fixed and separate.  So, for example, we could say that God originally created the "family" of the finches, but within the limits of that "family," the separate species of finches endemic to the Galapagos Islands evolved by natural selection to be adaptive to those islands.

Notice what this means for the taxonomic classification of human beings.  If the "kind" of human beings refers to their taxonomic "family," then in modern taxonomy, human beings belong to the "family" of Hominidae, which includes chimps, bonobos, gorillas, and orangutan.  Even the young-earth creationist Todd Wood (2010) accepts this Hominidae classification of humans with the great apes, although he identifies the "human holobaramin" as the genus Homo.

This idea of "created kinds" was crucial for Ham in solving an old problem with Noah's Ark.  If the Ark carried all the "kinds" of land-based plants and animals, how could the Ark be big enough to hold all of the land-based species--which could be numbered in the millions?

Ham's creationist researchers have solved this problem by calculating that among these land-dependent vertebrate species, there are fewer than 1,400 known living and extinct kinds (that is, families).  This allows them to estimate that Noah had to have fewer than 6,744 individual animals on the Ark.  Once these animals left the Ark, speciation by natural selection within kinds could create all the living and extinct species that we know today.  The Ham's Ark Encounter is designed to show how as many as 6,744 animals and 8 human beings (Noah and his extended family) could survive on the Ark for almost a year.  But notice that this is a speculative reading of the Bible that never defines "kind" in this way.  This is not the clear meaning of the Bible, as Ham claims.  Indeed, if you go to the Ark Encounter in Kentucky, you might notice one display that speaks of the need for "Arktistic license" in making up details in the story of the Ark that have no basis in the Bible.

Since the Bible is so obscure in its creation story, and since so much of that story sounds like a figurative folk tale that was not meant to be a literal account of natural history, many Christians (like C. S. Lewis, Francis Collins, and Deborah Haarsma) have decided that the Bible could be read as allowing for theistic evolution or evolutionary creation.  According to this conception, God created the universal laws of nature at the beginning of the Universe, but then He allowed all the forms of life to emerge by natural evolution.  God is the "primary cause" of everything.  But the evolutionary process unfolds through the "secondary causes" of nature.  Even Darwin himself accepted this metaphysical conception of "dual causality" that reconciles belief in God as First Cause with acceptance of evolutionary science.  At various points in the Creation Museum and the Ark Encounter, there are displays that acknowledge that many if not most Christians accept some version of this theistic evolution.

But what about the creation of human beings in the image of God?  If the "image of God" refers to the God-like intellect of man, then we might argue that the extraordinary mental capacities of human beings could have evolved through the evolution of the primate brain.  I have argued that the evolution in the size and complexity of the primate brain passed over a critical threshold so that now there are 86 billion neurons in the human brain, and of that total, 16 billion are in the cerebral cortex, which includes 1.3 billion neurons in the prefrontal cortex.  That emergent evolution of the brain created the uniquely powerful human mind.  We were created in the image of the primate brain.

Even if we are only 15 percent genetically different from chimps, we are different in kind from chimps because we have the mental capacities for language, morality, and symbolic abstraction that they do not have at all.  That's the difference that makes all the difference.

REFERENCES

Behe, Michael. 2007. The Edge of Evolution: The Search for the  Limits of Darwinism. New York: The Free Press.

Ham, Ken. 2025. "Study Finds Chimp DNA Is Not '99% Identical' to Ours." Answers in Genesis. Ken Ham Blog. May 27. Online.

Jablonka, Eva, and Marion J. Lamb. 2014. Evolution in Four Dimensions: Genetic, Epigenetic, Behavioral, and Symbolic Variation in the History of Life. Revised edition. Cambridge: MIT Press.

Luskin, Casey. 2025. "Fact Check: New 'Complete' Chimp Genome Shows 14.9 Percent Difference from Human Genome." Science and Culture Today, May 21, online.

Wood, Todd Charles. 2010. "Baraminological Analysis Places Homo habilis, Homo rudolfensis, and Australopithecus sediba in the Human Holobaramin." Answers Research Journal 3: 71-90.

Yoo, Dong Ahn, et al. 2025. "Complete Sequencing of Ape Genomes." Nature 641: 401-418.